Run the bubble popper through the jar to release air. Wipe the rim clean with a damp paper towel.
Center a lid on the jar, and screw on the band until it is fingertip tight. Use the jar lifter to place the jar back into the canner, and repeat with the remaining jars.
Once all the jars are in canner, adjust the water level so it is two inches above the jar tops. Adjust the space in between the jars to allow hot water to circulate.
Cover the canner and bring to boil over high heat. Once water boils vigorously, continue boiling quart size jars for 45 minutes (40 minutes for pint jars) at altitudes of less than 1,000 feet. Adjust processing time for your altitude if necessary. (See notes).
When processing time is complete, turn off the heat and let the canner to cool and settle for about 5 minutes.
Spread a dry kitchen towel on the counter. Remove the cover by tilting lid away from you so that steam does not burn your face.
Use the jar lifter to lift jars carefully from canner and place on the towel. Keep the jars upright, and don't tighten bands or check the seals yet. Let the jars sit undisturbed for 12 to 24-hours to cool.
After the jars have cooled for at least 12 hours, check to be sure jar lids have sealed by pushing on the center of the lid. The lid should not pop up. If the lid flexes up and down, it did not seal. Refrigerate the jar and use within a week.
Remove the ring bands, wash, label, date the jars, and store the canned tomatoes in a cool, dark location between 50 to 70 degrees F for 12 to 18 months. Once the jar is open, refrigerate and use up within a week. Yields about 7 quarts of whole tomatoes.